基于GEO数据库筛选脊髓损伤中差异PANoptosis相关基因
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R651.2

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陕西省教育厅一般专项科学研究计划项目(25JK0752); 延安职业技术学院校级科研项目(YZKQ2502;YZKZ2503);


Identification of differentially expressed PANoptosis-related genes in spinal cord injury based on the GEO database
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    摘要:

    目的:旨在探讨PANoptosis相关基因(PRGs)在SCI中的作用机制。方法:基于GEO数据库中的GSE151371数据集(包含38例SCI样本和10例健康对照样本)开展系统分析。通过差异表达分析、加权基因共表达网络分析(WGCNA)及机器学习等综合策略,筛选鉴定与SCI发病机制相关的关键基因。结果:共鉴定出1 138个SCI患者与健康对照之间的差异表达基因(DEGs),其中19个为PRGs与WGCNA模块基因的交集特征基因。功能富集分析显示,这些基因主要参与免疫炎症反应调控、炎症细胞黏附与分化及蛋白酶相关过程。基于机器学习的特征筛选获得8个枢纽基因,其中仅NOL3在独立验证数据集GSE45006中得到一致验证。免疫浸润分析进一步表明,NOL3表达与中性粒细胞和巨噬细胞浸润呈显著正相关,与多种T细胞亚群呈显著负相关,尤以活化CD8+ T细胞最为显著。结论:NOL3可能在SCI的病理生理过程中发挥重要作用,其具有潜在的诊断标志物及治疗靶点价值。

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    Objective: To investigate the potential role of PANoptosis-related genes (PRGs) in the pathogenesis of SCI using bioinformatics approaches. Methods: The GSE151371 dataset from the Gene Expression Omnibus (GEO) database, comprising 38 SCI samples and 10 healthy control samples, was analyzed. Differential expression analysis, weighted gene co-expression network analysis (WGCNA), and machine learning algorithms were integratively applied to identify key genes associated with SCI. Results: A total of 1,138 differentially expressed genes (DEGs) were identified between SCI patients and healthy controls. Among them, 19 overlapping signature genes were obtained from the intersection of PRGs and WGCNA module genes. Functional enrichment analysis indicated that these genes were mainly involved in the regulation of immune and inflammatory responses, inflammatory cell adhesion and differentiation, and protease-related processes. Machine learning-based feature selection identified 8 hub genes, among which only NOL3 was consistently validated in the independent GSE45006 dataset. Immune infiltration analysis further demonstrated that NOL3 expression was positively correlated with neutrophil and macrophage infiltration, and negatively correlated with multiple T cell subsets, with the strongest negative correlation observed in activated CD8? T cells. Conclusion: NOL3 may play an important role in the pathophysiology of SCI and has potential value as a diagnostic biomarker and therapeutic target.

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马宇莘;袁玮;车晓宁;刘晓琴;.基于GEO数据库筛选脊髓损伤中差异PANoptosis相关基因[J].川北医学院学报,2026,41(9):1041-1047.

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  • 在线发布日期: 2026-10-09
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